Hello Bioinformatics lovers,

Ten days into 2025, how are you executing your goals?

I am committed to posting a long-form post every day in 2025.

Below you can find the links to the posts from the past week.

I promised to write an end-to-end tutorial to replicate a genomics figure during the holidays.

It is now here! https://crazyhottommy.github.io/reproduce_genomics_paper_figures/​

If you are curious about what I used to make the website, it is workflowr https://github.com/workflowr/workflowr.

I used it to create a single-cell RNAseq workshop back in 2019 https://crazyhottommy.github.io/scRNA-seq-workshop-Fall-2019/​

If you have questions, feel free to email me and I will do my best to answer you.

I also plan to make multiple videos to walk through it, which will be in a couple of weeks. Stay tuned!

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PS: The long LinkedIn posts this week that you may find helpful:

1. ​How to make a correlation plot with p-values.
2. ​Unix one-liner to calculate read length for a fastq file.​
3. ​bioinformatics software tool installation: the biggest hurdle for beginners.
4. ​A code snippet to get every mouse gene length using bioconductor​
5. ​Has AI changed the drug development process? Tldr: NO​
6. ​AI is cool, but basic bioinformatics skills are still the bread and butter for data analysis​
7. ​A useful function tile() to create equal lengths of genomics interval bins.​

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PPS:

If you want to learn Bioinformatics, there are other ways that I can help:

1. My free YouTube Chatomics channel, make sure you subscribe to it.
2. I have many resources collected on my github here.
3. I have been writing blog posts for over 10 years https://divingintogeneticsandgenomics.com/​

Stay awesome!